Evaluation Utilities¶

The dnanet.evaluation.utils module provides utility functions for allele-level metric computation.

Functions¶

from dnanet.evaluation.utils import flatten_markers_to_allele_names

flatten_markers_to_allele_names(markers, *, locus=None) — Flatten a sequence of Marker objects to a set of "MarkerName_AlleleName" strings.

Optionally filters by locus name.

Example:

>>> markers = [Marker("D5S818", 0, frozenset(Allele("13", height=500), Allele("15", height=200)))]
>>> flatten_markers_to_allele_names(markers)
frozenset({'D5S818_13', 'D5S818_15'})

Args: - markers — Sequence of Marker objects to flatten - locus — If provided, only include alleles from this locus

Returns: Frozen set of "marker_allele" strings

Raises: ValueError — If an RFU threshold is set but allele height is None