Evaluation¶

Allele Metrics¶

Metrics that evaluate allele-level accuracy after allele calling.

from dnanet.evaluation.metrics.allele import AllelePrecision, AlleleRecall, AlleleF1Score

• AllelePrecision().update(gt_markers, pred_markers) / compute() → tensor
• AlleleRecall().update(gt_markers, pred_markers) / compute() → tensor
• AlleleF1Score().update(gt_markers, pred_markers) / compute() → tensor

Allele Caller¶

Translates pixel-level predictions into discrete allele calls.

from dnanet.evaluation.allele_caller import AlleleCaller, NearestBasePairCaller

Visualization¶

from dnanet.evaluation.visualization import plot_profile, plot_profile_marker

plot_profile(signal, annotation, prediction, title) — Plot a full DNA profile with optional multiclass annotations.

plot_profile_marker(signal, scaler, marker_bp_range, dye_row, annotation, prediction, title) — Plot a single marker region of an EPG profile.